SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 12)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1571878	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1854853	0.82[CEU][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3093017	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3093018	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3093019	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3093023	0.88[CEU][hapmap];0.91[CHB][hapmap];0.85[JPT][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3093024	0.96[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];0.92[YRI][hapmap];0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3093025	0.85[CEU][hapmap];0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6905876	0.81[JPT][hapmap]
rs6905911	0.81[JPT][hapmap]
rs6907666	0.92[CEU][hapmap]
rs9457273	0.81[JPT][hapmap]

rSNP related genes

Symbol	Regulation type
CCR6	RNA binding protein mediated regulation

rSNP related regulatory elements

eQTL evidence (count: 0)