SNP Report
Basic Infomation
| Name | rs6907666 dbSNP |
|---|---|
| Location | chr:6,167523395 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 21)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10946205 | 0.95[CHB][hapmap] |
| rs10946207 | 0.80[CEU][hapmap] |
| rs10946216 | 0.92[CEU][hapmap] |
| rs1130033 | 0.90[CHB][hapmap] |
| rs1571878 | 0.96[CEU][hapmap] |
| rs1854853 | 0.82[CEU][hapmap];0.83[JPT][hapmap] |
| rs2237277 | 1.00[CHB][hapmap] |
| rs2282860 | 0.95[CHB][hapmap] |
| rs2282861 | 0.95[CHB][hapmap] |
| rs3093023 | 0.88[CEU][hapmap];0.80[GIH][hapmap];0.81[TSI][hapmap] |
| rs3093024 | 0.96[CEU][hapmap];0.80[GIH][hapmap];0.81[TSI][hapmap];0.80[EUR][1000 genomes] |
| rs3093025 | 0.92[CEU][hapmap];0.80[EUR][1000 genomes] |
| rs4710185 | 0.85[CEU][hapmap];0.80[MEX][hapmap];0.85[TSI][hapmap];0.89[EUR][1000 genomes] |
| rs7749278 | 0.95[CHB][hapmap] |
| rs7774396 | 0.80[EUR][1000 genomes] |
| rs933243 | 0.91[CHB][hapmap] |
| rs9347170 | 0.91[CHB][hapmap] |
| rs9355610 | 0.91[CHB][hapmap] |
| rs9366078 | 0.91[CHB][hapmap] |
| rs9457273 | 0.83[TSI][hapmap];0.80[EUR][1000 genomes] |
| rs9459835 | 0.95[CHB][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CCR6 | Proximal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 5)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014