SNP Report
Basic Infomation
| Name | rs4710185 dbSNP |
|---|---|
| Location | chr:6,167522386 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 24)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1060404 | 0.81[CHB][hapmap] |
| rs10946204 | 0.81[CHB][hapmap] |
| rs10946207 | 0.81[CHB][hapmap] |
| rs13195812 | 0.81[CHB][hapmap] |
| rs1571878 | 0.81[CEU][hapmap] |
| rs2237276 | 0.81[CHB][hapmap] |
| rs239935 | 0.81[CHB][hapmap] |
| rs3093024 | 0.81[CEU][hapmap] |
| rs3093025 | 0.80[CEU][hapmap] |
| rs6900701 | 0.81[CHB][hapmap] |
| rs6904946 | 0.81[CHB][hapmap] |
| rs6905876 | 0.83[MEX][hapmap] |
| rs6907666 | 0.85[CEU][hapmap];0.80[MEX][hapmap];0.85[TSI][hapmap];0.89[EUR][1000 genomes] |
| rs6923582 | 0.81[CHB][hapmap] |
| rs9295385 | 0.81[CHB][hapmap] |
| rs9457249 | 0.81[CHB][hapmap] |
| rs9457251 | 0.81[CHB][hapmap] |
| rs9457252 | 0.81[CHB][hapmap] |
| rs9457256 | 0.81[CHB][hapmap] |
| rs9457273 | 0.80[MEX][hapmap] |
| rs9459836 | 0.87[ASW][hapmap] |
| rs9459838 | 0.81[CHB][hapmap] |
| rs9459841 | 0.80[CHB][hapmap] |
| rs9459849 | 0.81[CHB][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CCR6 | Proximal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 3)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014