SNP Report
Basic Infomation
| Name | rs239935 dbSNP |
|---|---|
| Location | chr:6,167411788 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 108)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1044059 | 0.92[EUR][1000 genomes] |
| rs10455982 | 0.85[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs10484531 | 0.94[CHB][hapmap];0.94[JPT][hapmap];0.89[YRI][hapmap];0.84[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs1060404 | 1.00[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs10946198 | 0.92[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs10946199 | 0.91[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs10946203 | 0.85[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs10946204 | 1.00[CHB][hapmap];0.94[CHD][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs10946207 | 1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.89[ASN][1000 genomes] |
| rs12212247 | 0.85[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs13192426 | 0.84[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs13195812 | 1.00[CHB][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes] |
| rs1322077 | 0.82[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs1620933 | 0.90[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs1743440 | 0.92[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs1743441 | 0.92[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs1794693 | 0.92[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs1794694 | 0.92[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs1794697 | 0.90[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs1819333 | 0.96[CEU][hapmap];0.84[MEX][hapmap];0.88[MKK][hapmap];0.96[TSI][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs2013815 | 0.86[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs2038580 | 0.94[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.89[ASN][1000 genomes] |
| rs2149083 | 0.84[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs2149084 | 0.84[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs2149085 | 0.96[CEU][hapmap];0.84[MEX][hapmap];0.81[MKK][hapmap];0.96[TSI][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs2149090 | 0.86[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs2149091 | 0.96[CEU][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs2149092 | 0.86[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs2149093 | 0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs2237272 | 0.85[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs2237274 | 0.88[CHB][hapmap];0.94[JPT][hapmap] |
| rs2237276 | 1.00[CHB][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes] |
| rs2247325 | 0.86[ASN][1000 genomes] |
| rs239934 | 0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs2757042 | 0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs2757044 | 0.91[EUR][1000 genomes] |
| rs2757046 | 0.86[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs2757047 | 0.86[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs2769345 | 0.87[CEU][hapmap];0.80[JPT][hapmap] |
| rs2769346 | 0.84[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs2769347 | 0.86[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs2769348 | 0.86[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs2769349 | 0.86[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs364283 | 0.88[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs364451 | 0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs365189 | 0.88[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs3752520 | 0.85[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs376097 | 0.91[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs376551 | 0.88[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs377232 | 0.89[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs385113 | 0.92[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs385460 | 0.96[CEU][hapmap] |
| rs385863 | 0.87[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs386548 | 0.96[CEU][hapmap];0.84[MEX][hapmap];0.88[MKK][hapmap];0.96[TSI][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs387733 | 0.96[CEU][hapmap];0.80[GIH][hapmap];0.83[MEX][hapmap];0.88[MKK][hapmap];0.96[TSI][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs388406 | 0.91[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs393727 | 0.95[CEU][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs397713 | 0.88[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs400063 | 0.86[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs400837 | 0.96[CEU][hapmap];0.84[MEX][hapmap];0.88[MKK][hapmap];0.96[TSI][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs401260 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs402191 | 0.96[CEU][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs402749 | 0.88[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs405553 | 0.96[CEU][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs406095 | 0.83[CEU][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs408040 | 0.90[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs408087 | 0.96[CEU][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs408918 | 0.96[CEU][hapmap];0.88[MKK][hapmap];0.91[TSI][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs409356 | 0.93[CEU][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs415987 | 0.90[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs422694 | 0.92[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs424185 | 0.93[CEU][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs425039 | 0.96[CEU][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs427824 | 0.96[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs429083 | 0.96[CEU][hapmap];0.84[MEX][hapmap];0.88[MKK][hapmap];0.96[TSI][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs430097 | 0.96[CEU][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs430145 | 1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs430293 | 0.96[CEU][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs433191 | 0.96[CEU][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs434093 | 0.87[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs436625 | 0.90[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs447042 | 0.92[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs448060 | 0.96[CEU][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs453184 | 0.88[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs4710147 | 0.95[CEU][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs4710160 | 0.87[EUR][1000 genomes] |
| rs4710161 | 0.92[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs4710171 | 0.85[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs4710185 | 0.81[CHB][hapmap] |
| rs5020533 | 0.90[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs6900701 | 1.00[CHB][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs6904946 | 1.00[CHB][hapmap];0.94[CHD][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes] |
| rs6923582 | 1.00[CHB][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes] |
| rs6929466 | 0.93[ASN][1000 genomes] |
| rs9295385 | 1.00[CHB][hapmap];0.88[CHD][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes] |
| rs932644 | 0.96[CEU][hapmap];0.88[MKK][hapmap];0.96[TSI][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs9348211 | 0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs9457249 | 1.00[CHB][hapmap];0.94[JPT][hapmap];0.80[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs9457251 | 1.00[CHB][hapmap];0.94[JPT][hapmap];0.80[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs9457252 | 1.00[CHB][hapmap];0.94[CHD][hapmap];0.94[JPT][hapmap];0.83[MEX][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs9457254 | 0.82[AMR][1000 genomes];0.82[ASN][1000 genomes] |
| rs9457256 | 1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs9457259 | 0.84[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs9459836 | 0.94[CHB][hapmap];0.94[CHD][hapmap];0.83[JPT][hapmap];0.80[TSI][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs9459838 | 1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs9459840 | 0.88[ASN][1000 genomes] |
| rs9459841 | 1.00[CHB][hapmap];0.92[JPT][hapmap];0.88[ASN][1000 genomes] |
| rs9459849 | 1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.88[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| FGFR1OP | Proximal transcriptional regulation |
| MIR3939 | Proximal transcriptional regulation |
| BET1L | Distal transcriptional regulation |
| RNASET2 | Distal transcriptional regulation |
| ENSG00000249141 | Distal transcriptional regulation |
| FGFR1OP | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 3)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014