SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 9)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10946216	0.88[CEU][hapmap];0.91[CHB][hapmap];0.85[JPT][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1571878	0.92[CEU][hapmap];0.91[CHB][hapmap];0.85[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1854853	0.83[EUR][1000 genomes]
rs3093017	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3093018	0.83[EUR][1000 genomes]
rs3093019	0.82[EUR][1000 genomes]
rs3093024	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.96[TSI][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3093025	0.83[CEU][hapmap];0.84[JPT][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6907666	0.88[CEU][hapmap];0.80[GIH][hapmap];0.81[TSI][hapmap]

rSNP related genes

Symbol	Regulation type
CCR6	Proximal transcriptional regulation

rSNP related regulatory elements

eQTL evidence (count: 4)