SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 16)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1012656	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1012657	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1331299	1.00[CEU][hapmap];0.98[GIH][hapmap];0.82[JPT][hapmap];0.95[TSI][hapmap];0.96[EUR][1000 genomes]
rs162289	0.86[CHB][hapmap]
rs162291	0.86[CHB][hapmap]
rs162293	0.86[CHB][hapmap]
rs162294	0.86[CHB][hapmap]
rs162295	0.81[CHB][hapmap]
rs162297	0.82[CHB][hapmap]
rs1854853	0.81[GIH][hapmap]
rs1855025	1.00[CEU][hapmap];0.93[GIH][hapmap];0.82[JPT][hapmap];0.95[TSI][hapmap];0.96[EUR][1000 genomes]
rs2021033	0.85[AMR][1000 genomes]
rs2023305	0.91[ASW][hapmap];0.85[CEU][hapmap];0.91[CHB][hapmap];0.84[CHD][hapmap];0.84[GIH][hapmap];0.95[JPT][hapmap];0.92[MEX][hapmap];0.93[TSI][hapmap];0.86[YRI][hapmap];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3093026	1.00[CEU][hapmap];0.95[GIH][hapmap];0.82[JPT][hapmap];0.95[TSI][hapmap];0.95[EUR][1000 genomes]
rs6911766	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9366076	0.82[CHB][hapmap]

rSNP related genes

Symbol	Regulation type
CCR6	Proximal transcriptional regulation

rSNP related regulatory elements

eQTL evidence (count: 3)