SNP Report
Basic Infomation
| Name | rs2021033 dbSNP |
|---|---|
| Location | chr:6,167524239 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 12)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1012656 | 0.86[AMR][1000 genomes] |
| rs1012657 | 0.87[AMR][1000 genomes] |
| rs1556413 | 0.85[AMR][1000 genomes] |
| rs2023305 | 0.85[CEU][hapmap];0.82[MEX][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs4709148 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes] |
| rs6456156 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes] |
| rs6905876 | 1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs6905911 | 1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs7761159 | 0.81[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes] |
| rs7774396 | 0.90[ASN][1000 genomes] |
| rs9457273 | 1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs9457274 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CCR6 | Proximal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014