SNP Report
Basic Infomation
| Name | rs1012657 dbSNP |
|---|---|
| Location | chr:6,167525142 |
| Allele | A/C |
LD-proxy of rSNPs(r2>0.8) (count: 15)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1012656 | 1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs1331299 | 1.00[CEU][hapmap];0.85[JPT][hapmap];0.96[EUR][1000 genomes] |
| rs1556413 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs162289 | 0.87[CHB][hapmap] |
| rs162291 | 0.87[CHB][hapmap] |
| rs162293 | 0.87[CHB][hapmap] |
| rs162294 | 0.87[CHB][hapmap] |
| rs162295 | 0.81[CHB][hapmap] |
| rs162297 | 0.82[CHB][hapmap] |
| rs1855025 | 1.00[CEU][hapmap];0.85[JPT][hapmap];0.96[EUR][1000 genomes] |
| rs2021033 | 0.87[AMR][1000 genomes] |
| rs2023305 | 0.85[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs3093026 | 1.00[CEU][hapmap];0.85[JPT][hapmap];0.96[EUR][1000 genomes] |
| rs6911766 | 0.84[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs9366076 | 0.82[CHB][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CCR6 | Proximal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014