SNP Report
Basic Infomation
| Name | rs162291 dbSNP |
|---|---|
| Location | chr:6,167437820 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1012656 | 0.86[CHB][hapmap] |
| rs1012657 | 0.87[CHB][hapmap] |
| rs1079145 | 0.83[JPT][hapmap] |
| rs1556413 | 0.86[CHB][hapmap] |
| rs162287 | 1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs162289 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs162293 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs162294 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs162295 | 1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs162297 | 1.00[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs2023305 | 0.86[CHB][hapmap] |
| rs2236312 | 0.83[JPT][hapmap] |
| rs239931 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs3798307 | 0.83[JPT][hapmap] |
| rs7772112 | 0.87[YRI][hapmap];0.81[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs9366076 | 0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| FGFR1OP | Proximal transcriptional regulation |
| MIR3939 | Distal transcriptional regulation |
| ENSG00000227598 | Distal transcriptional regulation |
| FGFR1OP | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014