SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 10)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1079145	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs162289	0.83[JPT][hapmap]
rs162291	0.83[JPT][hapmap]
rs162293	0.83[JPT][hapmap]
rs162294	0.83[JPT][hapmap]
rs162295	0.82[JPT][hapmap];0.82[MEX][hapmap]
rs162297	0.87[JPT][hapmap];0.87[MEX][hapmap]
rs2236312	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3777727	0.87[ASN][1000 genomes]
rs9366076	0.83[JPT][hapmap];0.87[MEX][hapmap]

rSNP related genes

Symbol	Regulation type
ENSG00000197146	Proximal transcriptional regulation
ENSG00000197146	Distal transcriptional regulation
RNASET2	Distal transcriptional regulation
ENSG00000249141	Distal transcriptional regulation
ENSG00000227598	Distal transcriptional regulation
FGFR1OP	Distal transcriptional regulation
ENSG00000249141	RNA binding protein mediated regulation
RNASET2	RNA binding protein mediated regulation

rSNP related regulatory elements

eQTL evidence (count: 1)