SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 17)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1012656	0.81[CHB][hapmap]
rs1012657	0.82[CHB][hapmap]
rs1079145	0.89[CHD][hapmap];0.83[JPT][hapmap]
rs1556413	0.82[CHB][hapmap]
rs162289	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs162291	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs162293	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs162294	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs162295	0.91[CHB][hapmap];0.95[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.82[MKK][hapmap];1.00[YRI][hapmap]
rs162297	0.83[CHB][hapmap];0.81[CHD][hapmap];0.90[GIH][hapmap];0.95[JPT][hapmap];0.87[MEX][hapmap];0.85[MKK][hapmap];1.00[YRI][hapmap]
rs2023305	0.81[CHB][hapmap]
rs2236312	0.89[CHD][hapmap];0.83[JPT][hapmap];0.87[MEX][hapmap]
rs239931	0.81[ASN][1000 genomes]
rs3756838	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3798307	0.83[JPT][hapmap];0.87[MEX][hapmap]
rs62436424	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7772112	0.85[YRI][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
RNASET2	Proximal transcriptional regulation
ENSG00000249141	Proximal transcriptional regulation
ENSG00000249141	Distal transcriptional regulation
RNASET2	Distal transcriptional regulation
MIR3939	Distal transcriptional regulation
ENSG00000227598	Distal transcriptional regulation
FGFR1OP	Distal transcriptional regulation

rSNP related regulatory elements

eQTL evidence (count: 2)

eQTL related gene	Source
ZNF827	SCAN
RNASET2	SCAN