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rVarBase
SNP Report
Basic Infomation
Name
rs3756838  
dbSNP
Location
chr:6,167371251
Allele
G/A
LD-proxy of rSNPs(r
2
>0.8) (count: 3)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs62436424
0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7772112
0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9366076
0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rSNP related genes
Symbol
Regulation type
RNASET2
Proximal transcriptional regulation
ENSG00000249141
Proximal transcriptional regulation
RNASET2
Distal transcriptional regulation
ENSG00000227598
Distal transcriptional regulation
FGFR1OP
Distal transcriptional regulation
MIR3939
Distal transcriptional regulation
ENSG00000249141
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)