SNP Report
Basic Infomation
| Name | rs1331299 dbSNP |
|---|---|
| Location | chr:6,167533467 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 9)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1012656 | 1.00[CEU][hapmap];0.82[CHB][hapmap];0.86[JPT][hapmap];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs1012657 | 1.00[CEU][hapmap];0.85[JPT][hapmap];0.96[EUR][1000 genomes] |
| rs1556413 | 1.00[CEU][hapmap];0.98[GIH][hapmap];0.82[JPT][hapmap];0.95[TSI][hapmap];0.96[EUR][1000 genomes] |
| rs1854853 | 0.83[TSI][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs1855025 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2023305 | 0.85[CEU][hapmap];0.82[CHB][hapmap];0.81[GIH][hapmap];0.93[TSI][hapmap];0.88[EUR][1000 genomes] |
| rs3093018 | 0.87[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs3093019 | 0.85[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs3093026 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CCR6 | Proximal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 6)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014