SNP Report
Basic Infomation
| Name | rs17801742 dbSNP |
|---|---|
| Location | chr:12,48376869 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 20)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10219510 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs12300271 | 0.85[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes] |
| rs12313208 | 1.00[GIH][hapmap];1.00[MEX][hapmap] |
| rs12721425 | 0.84[CEU][hapmap] |
| rs12721427 | 0.84[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap] |
| rs1541408 | 1.00[GIH][hapmap];1.00[MEX][hapmap] |
| rs41263845 | 0.83[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs41263861 | 1.00[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs41272749 | 0.83[AMR][1000 genomes] |
| rs41317929 | 0.83[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs41317933 | 0.83[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs41317939 | 0.83[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs55698101 | 0.81[EUR][1000 genomes] |
| rs55744743 | 0.83[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs55967487 | 1.00[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs56006800 | 0.85[EUR][1000 genomes] |
| rs56010633 | 0.83[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs56387272 | 0.87[EUR][1000 genomes] |
| rs57444859 | 0.81[EUR][1000 genomes] |
| rs740023 | 0.92[CEU][hapmap];1.00[MEX][hapmap];0.87[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| COL2A1 | Distal transcriptional regulation |
| COL2A1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014