SNP Report
Basic Infomation
| Name | rs57444859 dbSNP |
|---|---|
| Location | chr:12,48374011 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 18)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs12300271 | 0.88[EUR][1000 genomes] |
| rs17801742 | 0.81[EUR][1000 genomes] |
| rs41263861 | 0.92[EUR][1000 genomes] |
| rs41272027 | 0.87[AFR][1000 genomes] |
| rs41272035 | 0.87[AFR][1000 genomes] |
| rs41272745 | 0.81[AFR][1000 genomes] |
| rs55967487 | 0.92[EUR][1000 genomes] |
| rs56265470 | 0.81[AFR][1000 genomes] |
| rs56387272 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs57550917 | 0.81[AFR][1000 genomes] |
| rs58279970 | 0.81[AFR][1000 genomes] |
| rs58431786 | 0.87[AFR][1000 genomes] |
| rs58783688 | 0.83[AFR][1000 genomes] |
| rs73297159 | 0.85[AFR][1000 genomes] |
| rs73297161 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs73297163 | 0.85[AFR][1000 genomes] |
| rs74086446 | 0.85[AFR][1000 genomes] |
| rs74086449 | 0.85[AFR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| COL2A1 | Proximal transcriptional regulation |
| COL2A1 | Distal transcriptional regulation |
| COL2A1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014