SNP Report
Basic Infomation
| Name | rs74086446 dbSNP |
|---|---|
| Location | chr:12,48372880 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 47)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10467100 | 1.00[EUR][1000 genomes] |
| rs11168264 | 1.00[EUR][1000 genomes] |
| rs11168288 | 1.00[EUR][1000 genomes] |
| rs11168290 | 1.00[EUR][1000 genomes] |
| rs11574002 | 1.00[EUR][1000 genomes] |
| rs11574060 | 1.00[EUR][1000 genomes] |
| rs11830088 | 1.00[EUR][1000 genomes] |
| rs11833896 | 1.00[EUR][1000 genomes] |
| rs11835282 | 1.00[EUR][1000 genomes] |
| rs11838217 | 1.00[EUR][1000 genomes] |
| rs12297117 | 1.00[EUR][1000 genomes] |
| rs1793947 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs34116679 | 1.00[EUR][1000 genomes] |
| rs34120080 | 1.00[EUR][1000 genomes] |
| rs34698661 | 1.00[EUR][1000 genomes] |
| rs35445616 | 1.00[EUR][1000 genomes] |
| rs35902603 | 1.00[EUR][1000 genomes] |
| rs41272027 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs41272035 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs41272745 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs41272751 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs41272757 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs41272761 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs56265470 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs56387272 | 0.85[AFR][1000 genomes] |
| rs57444859 | 0.85[AFR][1000 genomes] |
| rs57550917 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs57783574 | 1.00[EUR][1000 genomes] |
| rs58279970 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs58431786 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs58573495 | 1.00[EUR][1000 genomes] |
| rs58783688 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs59339937 | 1.00[EUR][1000 genomes] |
| rs60556433 | 1.00[EUR][1000 genomes] |
| rs60894356 | 1.00[EUR][1000 genomes] |
| rs7316602 | 1.00[EUR][1000 genomes] |
| rs73297147 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73297150 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73297159 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73297161 | 0.87[AFR][1000 genomes] |
| rs73297163 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74085221 | 1.00[EUR][1000 genomes] |
| rs74086449 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74088715 | 1.00[EUR][1000 genomes] |
| rs74088779 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7954412 | 1.00[EUR][1000 genomes] |
| rs7967673 | 1.00[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| COL2A1 | Proximal transcriptional regulation |
| COL2A1 | Distal transcriptional regulation |
| COL2A1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014