SNP Report
Basic Infomation
| Name | rs57783574 dbSNP |
|---|---|
| Location | chr:12,48484148 |
| Allele | A/T |
LD-proxy of rSNPs(r2>0.8) (count: 37)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10467100 | 1.00[EUR][1000 genomes] |
| rs11168288 | 1.00[EUR][1000 genomes] |
| rs11168290 | 1.00[EUR][1000 genomes] |
| rs11574002 | 1.00[EUR][1000 genomes] |
| rs11830088 | 0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11830546 | 1.00[ASN][1000 genomes] |
| rs11833896 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11835145 | 1.00[ASN][1000 genomes] |
| rs11835282 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11838217 | 0.85[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12297117 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17122786 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1793947 | 1.00[EUR][1000 genomes] |
| rs34116679 | 1.00[EUR][1000 genomes] |
| rs34120080 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34698661 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35445616 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35902603 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs41272745 | 1.00[EUR][1000 genomes] |
| rs41272751 | 1.00[EUR][1000 genomes] |
| rs41272757 | 1.00[EUR][1000 genomes] |
| rs41272761 | 1.00[EUR][1000 genomes] |
| rs56265470 | 1.00[EUR][1000 genomes] |
| rs57550917 | 1.00[EUR][1000 genomes] |
| rs58279970 | 1.00[EUR][1000 genomes] |
| rs58373242 | 1.00[ASN][1000 genomes] |
| rs58573495 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs59339937 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs60001274 | 0.83[AFR][1000 genomes] |
| rs60556433 | 1.00[EUR][1000 genomes] |
| rs60894356 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73297147 | 1.00[EUR][1000 genomes] |
| rs73297150 | 1.00[EUR][1000 genomes] |
| rs73297159 | 1.00[EUR][1000 genomes] |
| rs74086446 | 1.00[EUR][1000 genomes] |
| rs74088715 | 1.00[EUR][1000 genomes] |
| rs74088779 | 1.00[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PFKM | Distal transcriptional regulation |
| SENP1 | Distal transcriptional regulation |
| SENP1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014