SNP Report
Basic Infomation
| Name | rs58373242 dbSNP |
|---|---|
| Location | chr:12,48513275 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 46)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11830088 | 1.00[ASN][1000 genomes] |
| rs11830546 | 1.00[ASN][1000 genomes] |
| rs11833896 | 1.00[ASN][1000 genomes] |
| rs11835145 | 1.00[ASN][1000 genomes] |
| rs11835282 | 1.00[ASN][1000 genomes] |
| rs12297117 | 1.00[ASN][1000 genomes] |
| rs17122786 | 1.00[ASN][1000 genomes] |
| rs34120080 | 1.00[ASN][1000 genomes] |
| rs34698661 | 1.00[ASN][1000 genomes] |
| rs35445616 | 1.00[ASN][1000 genomes] |
| rs35902603 | 1.00[ASN][1000 genomes] |
| rs55759881 | 1.00[AMR][1000 genomes] |
| rs55789595 | 1.00[AMR][1000 genomes] |
| rs55991805 | 0.83[AMR][1000 genomes] |
| rs57539024 | 0.83[AMR][1000 genomes] |
| rs57783574 | 1.00[ASN][1000 genomes] |
| rs58148022 | 1.00[AMR][1000 genomes] |
| rs58573495 | 1.00[ASN][1000 genomes] |
| rs59051221 | 0.83[AMR][1000 genomes] |
| rs59182752 | 0.83[AMR][1000 genomes] |
| rs59339937 | 1.00[ASN][1000 genomes] |
| rs59643562 | 0.83[AMR][1000 genomes] |
| rs59787033 | 0.83[AMR][1000 genomes] |
| rs59896935 | 0.83[AMR][1000 genomes] |
| rs60001451 | 0.83[AMR][1000 genomes] |
| rs60316794 | 0.83[AMR][1000 genomes] |
| rs60894356 | 1.00[ASN][1000 genomes] |
| rs61558457 | 0.83[AMR][1000 genomes] |
| rs61750873 | 1.00[AMR][1000 genomes] |
| rs7316275 | 0.83[AMR][1000 genomes] |
| rs74086781 | 1.00[AMR][1000 genomes] |
| rs74086968 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74086984 | 0.84[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs74087200 | 1.00[EUR][1000 genomes] |
| rs74089112 | 0.83[AMR][1000 genomes] |
| rs74089120 | 0.83[AMR][1000 genomes] |
| rs74089127 | 0.83[AMR][1000 genomes] |
| rs74089135 | 0.83[AMR][1000 genomes] |
| rs74089149 | 0.83[AMR][1000 genomes] |
| rs74089151 | 0.83[AMR][1000 genomes] |
| rs74089154 | 0.83[AMR][1000 genomes] |
| rs74089161 | 0.83[AMR][1000 genomes] |
| rs74089171 | 0.83[AMR][1000 genomes] |
| rs74089540 | 1.00[AMR][1000 genomes] |
| rs74089548 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74089549 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PFKM | Proximal transcriptional regulation |
| PDP1 | Distal transcriptional regulation |
| PFKM | Distal transcriptional regulation |
| SENP1 | Distal transcriptional regulation |
| ENSG00000269514 | Distal transcriptional regulation |
| ASB8 | Distal transcriptional regulation |
| PFKM | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014