SNP Report
Basic Infomation
| Name | rs59896935 dbSNP |
|---|---|
| Location | chr:12,48524794 |
| Allele | T/G |
LD-proxy of rSNPs(r2>0.8) (count: 36)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs55759881 | 0.83[AMR][1000 genomes] |
| rs55789595 | 0.83[AMR][1000 genomes] |
| rs55991805 | 1.00[AMR][1000 genomes] |
| rs56009798 | 0.83[AFR][1000 genomes] |
| rs56692411 | 0.83[AFR][1000 genomes] |
| rs57539024 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs58148022 | 0.83[AMR][1000 genomes] |
| rs58373242 | 0.83[AMR][1000 genomes] |
| rs59051221 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs59182752 | 1.00[AMR][1000 genomes] |
| rs59233899 | 0.90[AFR][1000 genomes] |
| rs59643562 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs59787033 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs60001451 | 1.00[AMR][1000 genomes] |
| rs60316794 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs60432008 | 0.86[AFR][1000 genomes] |
| rs61558457 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs61750873 | 0.83[AMR][1000 genomes] |
| rs7316275 | 1.00[AMR][1000 genomes] |
| rs74086781 | 0.83[AMR][1000 genomes] |
| rs74086968 | 0.83[AMR][1000 genomes] |
| rs74086984 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74086997 | 0.83[AFR][1000 genomes] |
| rs74089112 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74089120 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74089122 | 0.83[AFR][1000 genomes] |
| rs74089127 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74089135 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74089149 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74089151 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74089154 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74089161 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74089171 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74089540 | 0.83[AMR][1000 genomes] |
| rs74089548 | 0.83[AMR][1000 genomes] |
| rs74089549 | 0.83[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PFKM | Distal transcriptional regulation |
| PFKM | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014