SNP Report
Basic Infomation
| Name | rs7967673 dbSNP |
|---|---|
| Location | chr:12,48237248 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 30)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10467100 | 1.00[EUR][1000 genomes] |
| rs11168264 | 1.00[EUR][1000 genomes] |
| rs11168288 | 1.00[EUR][1000 genomes] |
| rs11168290 | 1.00[EUR][1000 genomes] |
| rs11574002 | 1.00[EUR][1000 genomes] |
| rs11574060 | 1.00[EUR][1000 genomes] |
| rs12297117 | 1.00[EUR][1000 genomes] |
| rs1793947 | 1.00[EUR][1000 genomes] |
| rs2525045 | 1.00[MEX][hapmap] |
| rs34116679 | 1.00[EUR][1000 genomes] |
| rs41272745 | 1.00[EUR][1000 genomes] |
| rs41272751 | 1.00[EUR][1000 genomes] |
| rs41272757 | 1.00[EUR][1000 genomes] |
| rs41272761 | 1.00[EUR][1000 genomes] |
| rs56265470 | 1.00[EUR][1000 genomes] |
| rs57550917 | 1.00[EUR][1000 genomes] |
| rs58279970 | 1.00[EUR][1000 genomes] |
| rs60556433 | 1.00[EUR][1000 genomes] |
| rs7134842 | 1.00[MEX][hapmap] |
| rs7308119 | 1.00[MEX][hapmap] |
| rs7316602 | 1.00[EUR][1000 genomes] |
| rs73297147 | 1.00[EUR][1000 genomes] |
| rs73297150 | 1.00[EUR][1000 genomes] |
| rs73297159 | 1.00[EUR][1000 genomes] |
| rs74085216 | 1.00[EUR][1000 genomes] |
| rs74085221 | 1.00[EUR][1000 genomes] |
| rs74086446 | 1.00[EUR][1000 genomes] |
| rs74088715 | 1.00[EUR][1000 genomes] |
| rs74088779 | 1.00[EUR][1000 genomes] |
| rs7954412 | 1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| VDR | Proximal transcriptional regulation |
| SLC48A1 | Distal transcriptional regulation |
| VDR | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| TPM2 | seeQTL |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014