SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 16)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11503873	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12300271	1.00[GIH][hapmap]
rs12721425	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12721426	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12721427	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1541408	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17801742	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs2408878	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35000511	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4077869	1.00[CHB][hapmap]
rs41272749	0.90[EUR][1000 genomes]
rs41272777	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56196515	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7135926	1.00[CEU][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73297161	0.82[EUR][1000 genomes]
rs740023	1.00[MEX][hapmap]

rSNP related genes

Symbol	Regulation type
TMEM106C	Proximal transcriptional regulation

rSNP related regulatory elements

eQTL evidence (count: 1)