SNP Report
Basic Infomation
| Name | rs41272777 dbSNP |
|---|---|
| Location | chr:12,48367054 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 15)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11503873 | 0.92[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs12313208 | 0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12721425 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12721426 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12721427 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1541408 | 0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2408878 | 0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35000511 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs41263861 | 0.82[EUR][1000 genomes] |
| rs41272749 | 0.98[EUR][1000 genomes] |
| rs55967487 | 0.82[EUR][1000 genomes] |
| rs56196515 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs56387272 | 0.84[EUR][1000 genomes] |
| rs7135926 | 0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73297161 | 0.90[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| COL2A1 | Proximal transcriptional regulation |
| COL2A1 | Distal transcriptional regulation |
| COL2A1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014