SNP Report

Basic Infomation

Name	rs12721427 dbSNP
Location	chr:12,48368541
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 23)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10219510	0.84[CEU][hapmap]
rs11168244	1.00[LWK][hapmap]
rs11503873	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12300271	1.00[GIH][hapmap]
rs12313208	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12721425	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12721426	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1541408	1.00[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17607800	1.00[ASW][hapmap]
rs17801742	0.84[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap]
rs2408878	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35000511	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4077869	1.00[CHB][hapmap]
rs41263861	0.82[EUR][1000 genomes]
rs41272749	1.00[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs41272777	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55698101	1.00[AFR][1000 genomes]
rs55967487	0.82[EUR][1000 genomes]
rs56196515	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56387272	0.84[EUR][1000 genomes]
rs7135926	0.92[CEU][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73297161	0.90[EUR][1000 genomes]
rs740023	1.00[MEX][hapmap]

rSNP related genes

Symbol	Regulation type
COL2A1	Distal transcriptional regulation
COL2A1	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)