SNP Report
Name | rs4077869   dbSNP |
---|---|
Location | chr:12,48305644 |
Allele | A/G |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs10875698 | 0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs10875700 | 0.85[YRI][hapmap] |
rs10875702 | 0.89[YRI][hapmap] |
rs11168302 | 0.89[YRI][hapmap];0.81[AFR][1000 genomes] |
rs11168303 | 0.93[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs11168304 | 0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs11574032 | 1.00[JPT][hapmap] |
rs12313208 | 1.00[CHB][hapmap] |
rs12721425 | 1.00[CHB][hapmap] |
rs12721427 | 1.00[CHB][hapmap] |
rs1541408 | 1.00[CHB][hapmap] |
rs4402365 | 0.81[YRI][hapmap] |
rs4411327 | 0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs4514490 | 0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs57419443 | 1.00[EUR][1000 genomes] |
rs58915362 | 0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs61553170 | 1.00[EUR][1000 genomes] |
rs7302038 | 1.00[JPT][hapmap];0.89[YRI][hapmap];0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7970168 | 0.91[AFR][1000 genomes] |
rs7975847 | 0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs7979360 | 0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.82[AMR][1000 genomes] |
Symbol | Regulation type |
---|---|
VDR | Distal transcriptional regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014