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rVarBase
SNP Report
Basic Infomation
Name
rs57419443  
dbSNP
Location
chr:12,48333890
Allele
T/A
LD-proxy of rSNPs(r
2
>0.8) (count: 10)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs10875698
1.00[EUR][1000 genomes]
rs11168303
1.00[EUR][1000 genomes]
rs11168304
1.00[EUR][1000 genomes]
rs4077869
1.00[EUR][1000 genomes]
rs4411327
1.00[EUR][1000 genomes]
rs4514490
1.00[EUR][1000 genomes]
rs58915362
1.00[EUR][1000 genomes]
rs61553170
1.00[EUR][1000 genomes]
rs7302038
1.00[EUR][1000 genomes]
rs7975847
1.00[EUR][1000 genomes]
rSNP related genes
Symbol
Regulation type
HDAC7
Distal transcriptional regulation
VDR
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)