SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 17)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10875698	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10875700	0.89[YRI][hapmap]
rs10875702	0.88[YRI][hapmap]
rs11168302	0.88[ASW][hapmap];0.93[YRI][hapmap];0.83[AFR][1000 genomes]
rs11168303	0.96[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11168304	0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11168305	0.81[AFR][1000 genomes]
rs11574032	1.00[JPT][hapmap]
rs4077869	1.00[JPT][hapmap];0.89[YRI][hapmap];0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4411327	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4514490	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57419443	1.00[EUR][1000 genomes]
rs58915362	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61553170	1.00[EUR][1000 genomes]
rs7970168	0.94[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7975847	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7979360	0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.88[AMR][1000 genomes]

rSNP related genes

Symbol	Regulation type
VDR	Distal transcriptional regulation

rSNP related regulatory elements

eQTL evidence (count: 0)