SNP Report
Basic Infomation
| Name | rs11168302 dbSNP |
|---|---|
| Location | chr:12,48312253 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 18)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10875698 | 0.84[AFR][1000 genomes] |
| rs10875700 | 0.96[YRI][hapmap] |
| rs10875702 | 0.96[YRI][hapmap] |
| rs11168303 | 0.96[YRI][hapmap];0.83[AFR][1000 genomes] |
| rs11168304 | 1.00[YRI][hapmap];0.86[AFR][1000 genomes] |
| rs11168305 | 1.00[CEU][hapmap];1.00[JPT][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11574012 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes] |
| rs11574027 | 1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes] |
| rs12581281 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes] |
| rs4077869 | 0.89[YRI][hapmap];0.81[AFR][1000 genomes] |
| rs4402365 | 0.88[YRI][hapmap] |
| rs4411327 | 0.84[AFR][1000 genomes] |
| rs4514490 | 0.86[AFR][1000 genomes] |
| rs58379944 | 0.86[EUR][1000 genomes] |
| rs58915362 | 0.80[AFR][1000 genomes] |
| rs7302038 | 0.88[ASW][hapmap];0.93[YRI][hapmap];0.83[AFR][1000 genomes] |
| rs7975847 | 0.84[AFR][1000 genomes] |
| rs7979360 | 0.96[YRI][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| VDR | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| FAM113B | seeQTL |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014