SNP Report
Basic Infomation
| Name | rs7979360 dbSNP |
|---|---|
| Location | chr:12,48297792 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 14)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10875698 | 0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs10875700 | 0.93[YRI][hapmap] |
| rs10875702 | 0.93[YRI][hapmap] |
| rs11168302 | 0.96[YRI][hapmap] |
| rs11168303 | 1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs11168304 | 1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs4077869 | 0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.82[AMR][1000 genomes] |
| rs4402365 | 0.85[YRI][hapmap] |
| rs4411327 | 0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs4514490 | 0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs58915362 | 0.89[AFR][1000 genomes];0.88[AMR][1000 genomes] |
| rs7302038 | 0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.88[AMR][1000 genomes] |
| rs7970168 | 0.89[AFR][1000 genomes];0.83[ASN][1000 genomes] |
| rs7975847 | 0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000262049 | Distal transcriptional regulation |
| MRPL12 | Distal transcriptional regulation |
| ENSG00000262660 | Distal transcriptional regulation |
| SLC25A10 | Distal transcriptional regulation |
| RAPGEF3 | Distal transcriptional regulation |
| ENSG00000205537 | Distal transcriptional regulation |
| VDR | Distal transcriptional regulation |
| PFKM | Distal transcriptional regulation |
| SENP1 | Distal transcriptional regulation |
| TMEM106C | Distal transcriptional regulation |
| ENSG00000257488 | Distal transcriptional regulation |
| VDR | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014