SNP Report
Basic Infomation
| Name | rs740023 dbSNP |
|---|---|
| Location | chr:12,48382457 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 15)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10128968 | 1.00[JPT][hapmap] |
| rs10219510 | 0.92[CEU][hapmap];0.93[EUR][1000 genomes] |
| rs12313208 | 1.00[MEX][hapmap] |
| rs12721427 | 1.00[MEX][hapmap] |
| rs1541408 | 1.00[MEX][hapmap] |
| rs1775 | 1.00[JPT][hapmap] |
| rs17801742 | 0.92[CEU][hapmap];1.00[MEX][hapmap];0.87[EUR][1000 genomes] |
| rs41263845 | 0.93[EUR][1000 genomes] |
| rs41317929 | 1.00[EUR][1000 genomes] |
| rs41317933 | 0.98[EUR][1000 genomes] |
| rs41317939 | 0.96[EUR][1000 genomes] |
| rs55698101 | 1.00[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs55744743 | 0.93[EUR][1000 genomes] |
| rs56006800 | 0.98[EUR][1000 genomes] |
| rs56010633 | 0.93[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| COL2A1 | Proximal transcriptional regulation |
| COL2A1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| TMEM106C | seeQTL |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014