SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 12)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10219510	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17801742	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs41263845	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs41263861	0.83[AMR][1000 genomes]
rs41317929	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs41317939	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs55698101	0.92[EUR][1000 genomes]
rs55744743	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55967487	0.83[AMR][1000 genomes]
rs56006800	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56010633	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs740023	0.98[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
COL2A1	Proximal transcriptional regulation
COL2A1	RNA binding protein mediated regulation

rSNP related regulatory elements

eQTL evidence (count: 0)