SNP Report
Basic Infomation
| Name | rs16950687 dbSNP |
|---|---|
| Location | chr:15,67464013 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 19)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs12324906 | 0.81[ASN][1000 genomes] |
| rs12593904 | 0.82[JPT][hapmap];0.87[ASN][1000 genomes] |
| rs17228058 | 0.85[CEU][hapmap] |
| rs17293632 | 0.85[CEU][hapmap] |
| rs17294280 | 0.81[CEU][hapmap] |
| rs1866316 | 0.89[CEU][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs2033784 | 0.94[ASW][hapmap];0.90[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];0.80[JPT][hapmap];0.85[LWK][hapmap];0.91[MEX][hapmap];0.83[TSI][hapmap];0.89[YRI][hapmap];0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs2278546 | 0.89[JPT][hapmap];0.86[YRI][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs2289259 | 0.90[CHD][hapmap];0.90[JPT][hapmap];0.81[LWK][hapmap];0.87[ASN][1000 genomes] |
| rs28434383 | 0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs4562997 | 0.90[CEU][hapmap];0.95[CHB][hapmap];0.84[JPT][hapmap];0.89[YRI][hapmap];0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs4776344 | 0.90[LWK][hapmap] |
| rs7164786 | 0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs7174445 | 0.88[ASW][hapmap];0.90[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];0.80[JPT][hapmap];0.91[MEX][hapmap];0.85[TSI][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs7179893 | 0.90[CHD][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes] |
| rs74020121 | 0.86[ASN][1000 genomes] |
| rs8024330 | 0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs8032739 | 0.89[CEU][hapmap];0.90[CHB][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs9920190 | 0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SMAD3 | Proximal transcriptional regulation |
| SMAD3 | Distal transcriptional regulation |
| ENSG00000259202 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 3)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014