SNP Report
Basic Infomation
| Name | rs7179893 dbSNP |
|---|---|
| Location | chr:15,67459013 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 15)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs12324906 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs12593904 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs16950687 | 0.90[CHD][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes] |
| rs2033784 | 0.90[CHD][hapmap];0.80[JPT][hapmap];0.81[LWK][hapmap];0.83[ASN][1000 genomes] |
| rs2278546 | 1.00[CEU][hapmap];0.95[CHB][hapmap];0.82[ASN][1000 genomes] |
| rs2289259 | 0.88[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs28434383 | 0.82[ASN][1000 genomes] |
| rs4562997 | 0.84[JPT][hapmap];0.80[AFR][1000 genomes];0.85[ASN][1000 genomes] |
| rs4776344 | 0.90[CHB][hapmap];0.89[LWK][hapmap];0.80[ASN][1000 genomes] |
| rs7164786 | 0.81[ASN][1000 genomes] |
| rs7174445 | 0.90[CHD][hapmap];0.80[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs74020121 | 0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs8024330 | 0.81[ASN][1000 genomes] |
| rs8032739 | 0.81[CHB][hapmap];0.83[ASN][1000 genomes] |
| rs9920190 | 0.82[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SMAD3 | Proximal transcriptional regulation |
| SMAD3 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014