SNP Report
Basic Infomation
| Name | rs12593904 dbSNP |
|---|---|
| Location | chr:15,67465566 |
| Allele | G/T |
LD-proxy of rSNPs(r2>0.8) (count: 15)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs12324906 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs16950687 | 0.82[JPT][hapmap];0.87[ASN][1000 genomes] |
| rs2033784 | 0.83[ASN][1000 genomes] |
| rs2278546 | 1.00[CEU][hapmap];0.94[CHB][hapmap];0.87[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs2289259 | 1.00[CEU][hapmap];0.94[CHB][hapmap];0.82[JPT][hapmap];0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs28434383 | 0.83[ASN][1000 genomes] |
| rs4562997 | 0.86[ASN][1000 genomes] |
| rs4776344 | 0.88[CHB][hapmap];0.82[JPT][hapmap];0.84[ASN][1000 genomes] |
| rs7164786 | 0.82[ASN][1000 genomes] |
| rs7174445 | 0.83[ASN][1000 genomes] |
| rs7179893 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs74020121 | 0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs8024330 | 0.82[ASN][1000 genomes] |
| rs8032739 | 0.83[ASN][1000 genomes] |
| rs9920190 | 0.83[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SMAD3 | Proximal transcriptional regulation |
| SMAD3 | Distal transcriptional regulation |
| ENSG00000259202 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014