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rVarBase
SNP Report
Basic Infomation
Name
rs4776344  
dbSNP
Location
chr:15,67465363
Allele
G/A
LD-proxy of rSNPs(r
2
>0.8) (count: 10)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs11071939
0.82[CEU][hapmap]
rs12324906
0.90[CHB][hapmap]
rs12593904
0.88[CHB][hapmap];0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs16950687
0.90[LWK][hapmap]
rs17228313
0.82[CEU][hapmap]
rs2278546
0.84[CHB][hapmap]
rs2289259
0.85[CHB][hapmap];0.91[LWK][hapmap];0.82[YRI][hapmap];0.81[ASN][1000 genomes]
rs4776343
0.82[CEU][hapmap]
rs7179893
0.90[CHB][hapmap];0.89[LWK][hapmap];0.80[ASN][1000 genomes]
rs74020121
0.83[ASN][1000 genomes]
rSNP related genes
Symbol
Regulation type
SMAD3
Proximal transcriptional regulation
SMAD3
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 3)
eQTL related gene
Source
ZNF609
SCAN
SPESP1
SCAN
VPS13C
SCAN