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rVarBase
SNP Report
Basic Infomation
Name
rs12324906  
dbSNP
Location
chr:15,67467829
Allele
G/A
LD-proxy of rSNPs(r
2
>0.8) (count: 8)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs12593904
1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16950687
0.81[ASN][1000 genomes]
rs2278546
1.00[CEU][hapmap];0.95[CHB][hapmap];0.83[ASN][1000 genomes]
rs2289259
1.00[CEU][hapmap];0.94[CHB][hapmap];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4776344
0.90[CHB][hapmap]
rs7179893
1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs74020121
0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8032739
0.80[CHB][hapmap]
rSNP related genes
Symbol
Regulation type
SMAD3
Distal transcriptional regulation
ENSG00000259202
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)