SNP Report
Name | rs17293632   dbSNP |
---|---|
Location | chr:15,67442596 |
Allele | C/T |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs11635391 | 1.00[LWK][hapmap] |
rs16950687 | 0.85[CEU][hapmap] |
rs17213990 | 1.00[MKK][hapmap] |
rs17228058 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs17293443 | 1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap] |
rs17294280 | 1.00[LWK][hapmap];1.00[MKK][hapmap] |
rs1866316 | 1.00[CEU][hapmap] |
rs2033784 | 0.95[CEU][hapmap] |
rs4562997 | 0.95[CEU][hapmap] |
rs56062135 | 0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs56375023 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7174445 | 0.95[CEU][hapmap] |
rs72743461 | 1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs72743477 | 0.88[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs72743482 | 0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes] |
rs8032739 | 0.95[CEU][hapmap] |
rs920293 | 0.83[MKK][hapmap] |
Symbol | Regulation type |
---|---|
ENSG00000259202 | Proximal transcriptional regulation |
SMAD3 | Distal transcriptional regulation |
ENSG00000259202 | Distal transcriptional regulation |
AAGAB | Distal transcriptional regulation |
IQCH | Distal transcriptional regulation |
IQCH-AS1 | Distal transcriptional regulation |
C15orf61 | Distal transcriptional regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014