SNP Report
Basic Infomation
| Name | rs17293632 dbSNP |
|---|---|
| Location | chr:15,67442596 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 17)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11635391 | 1.00[LWK][hapmap] |
| rs16950687 | 0.85[CEU][hapmap] |
| rs17213990 | 1.00[MKK][hapmap] |
| rs17228058 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17293443 | 1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap] |
| rs17294280 | 1.00[LWK][hapmap];1.00[MKK][hapmap] |
| rs1866316 | 1.00[CEU][hapmap] |
| rs2033784 | 0.95[CEU][hapmap] |
| rs4562997 | 0.95[CEU][hapmap] |
| rs56062135 | 0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs56375023 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7174445 | 0.95[CEU][hapmap] |
| rs72743461 | 1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72743477 | 0.88[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs72743482 | 0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs8032739 | 0.95[CEU][hapmap] |
| rs920293 | 0.83[MKK][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000259202 | Proximal transcriptional regulation |
| SMAD3 | Distal transcriptional regulation |
| ENSG00000259202 | Distal transcriptional regulation |
| AAGAB | Distal transcriptional regulation |
| IQCH | Distal transcriptional regulation |
| IQCH-AS1 | Distal transcriptional regulation |
| C15orf61 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 4)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014