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rVarBase
SNP Report
Basic Infomation
Name
rs17293443  
dbSNP
Location
chr:15,67437863
Allele
T/C
LD-proxy of rSNPs(r
2
>0.8) (count: 7)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs11635391
1.00[LWK][hapmap]
rs17213990
1.00[MKK][hapmap]
rs17228058
1.00[YRI][hapmap]
rs17293632
1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs17294280
1.00[LWK][hapmap];1.00[MKK][hapmap]
rs72743459
0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs920293
0.83[MKK][hapmap]
rSNP related genes
Symbol
Regulation type
SMAD3
Distal transcriptional regulation
ENSG00000259202
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
eQTL related gene
Source
PIF1
SCAN