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rVarBase
SNP Report
Basic Infomation
Name
rs920293  
dbSNP
Location
chr:15,67414425
Allele
A/G
LD-proxy of rSNPs(r
2
>0.8) (count: 8)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs17213990
0.83[MKK][hapmap]
rs17293443
0.83[MKK][hapmap]
rs17293632
0.83[MKK][hapmap]
rs17294280
0.83[MKK][hapmap]
rs2053294
0.86[GIH][hapmap]
rs55993214
0.96[EUR][1000 genomes]
rs60428975
0.90[ASN][1000 genomes]
rs61592978
0.96[EUR][1000 genomes]
rSNP related genes
Symbol
Regulation type
SMAD3
Proximal transcriptional regulation
SMAD3
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)