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rVarBase
SNP Report
Basic Infomation
Name
rs60428975  
dbSNP
Location
chr:15,67408487
Allele
T/C
LD-proxy of rSNPs(r
2
>0.8) (count: 9)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs17213990
0.81[EUR][1000 genomes]
rs2053294
0.81[EUR][1000 genomes]
rs28647290
0.82[AMR][1000 genomes]
rs56067504
0.81[EUR][1000 genomes]
rs56099042
0.81[EUR][1000 genomes]
rs56118922
0.83[EUR][1000 genomes]
rs56286270
0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs56336169
0.81[EUR][1000 genomes]
rs920293
0.90[ASN][1000 genomes]
rSNP related genes
Symbol
Regulation type
SMAD3
Distal transcriptional regulation
ENSG00000259202
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)