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rVarBase
SNP Report
Basic Infomation
Name
rs28647290  
dbSNP
Location
chr:15,67405582
Allele
G/T/A
LD-proxy of rSNPs(r
2
>0.8) (count: 9)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs17213990
0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2053294
0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2053295
0.83[EUR][1000 genomes]
rs56067504
0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56099042
0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56118922
0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56286270
0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56336169
0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs60428975
0.82[AMR][1000 genomes]
rSNP related genes
Symbol
Regulation type
SMAD3
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)