SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 10)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs17213990	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];0.91[JPT][hapmap];0.91[TSI][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2053295	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.91[TSI][hapmap];0.94[EUR][1000 genomes]
rs28647290	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56067504	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56099042	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56118922	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56286270	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56336169	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60428975	0.81[EUR][1000 genomes]
rs920293	0.86[GIH][hapmap]

rSNP related genes

Symbol	Regulation type
SMAD3	Distal transcriptional regulation
ENSG00000259202	Distal transcriptional regulation

rSNP related regulatory elements

eQTL evidence (count: 0)