SNP Report

Basic Infomation

Name	rs10878386 dbSNP
Location	chr:12,40725928
Allele	A/G

LD-proxy of rSNPs(r²>0.8) (count: 42)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10459264	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10784485	0.85[CEU][hapmap];0.86[JPT][hapmap];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10784497	0.85[CEU][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.89[MEX][hapmap];0.93[TSI][hapmap];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10878299	0.85[CEU][hapmap];0.86[JPT][hapmap];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10878302	0.85[CEU][hapmap];0.86[JPT][hapmap];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10878336	1.00[CHB][hapmap];0.86[JPT][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10878452	0.87[CEU][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes]
rs11175793	0.85[CEU][hapmap];0.86[JPT][hapmap];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11175852	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11175902	0.97[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11175913	0.85[CEU][hapmap];0.86[JPT][hapmap];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11175941	1.00[CEU][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.97[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11175959	0.82[CEU][hapmap];0.86[JPT][hapmap];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11175963	0.85[CEU][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11175964	0.85[CEU][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.89[MEX][hapmap];0.81[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11176022	0.82[CEU][hapmap];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11176052	0.93[JPT][hapmap]
rs11176053	0.93[JPT][hapmap]
rs11176195	1.00[CEU][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];0.93[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes]
rs11176261	1.00[CEU][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes]
rs11564183	0.85[CEU][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11835105	0.80[CHD][hapmap];0.93[JPT][hapmap]
rs11836288	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12314692	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12316801	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12426498	1.00[CEU][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes]
rs12426891	0.85[CEU][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.89[MEX][hapmap];0.93[TSI][hapmap];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1388598	0.89[GIH][hapmap]
rs1491943	0.90[GIH][hapmap]
rs17490817	0.85[EUR][1000 genomes]
rs17490865	0.85[AMR][1000 genomes]
rs17492159	1.00[CEU][hapmap]
rs28365224	0.85[CEU][hapmap];0.86[JPT][hapmap];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28365238	1.00[CEU][hapmap];0.85[JPT][hapmap];0.83[AMR][1000 genomes]
rs3747891	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4318033	0.85[CEU][hapmap];0.86[JPT][hapmap];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56325408	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7133914	0.90[GIH][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7308720	0.85[CEU][hapmap];1.00[GIH][hapmap];0.89[MEX][hapmap];0.93[TSI][hapmap];0.85[EUR][1000 genomes]
rs73101520	0.83[AMR][1000 genomes]
rs73108329	0.97[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73108368	0.97[AMR][1000 genomes];0.85[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
LRRK2	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)