SNP Report

Basic Infomation

Name	rs7133914 dbSNP
Location	chr:12,40702911
Allele	G/A

LD-proxy of rSNPs(r²>0.8) (count: 41)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10459264	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10784485	0.85[CEU][hapmap];0.86[JPT][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10784497	0.87[ASW][hapmap];0.85[CEU][hapmap];0.89[CHD][hapmap];0.90[GIH][hapmap];0.86[JPT][hapmap];0.88[LWK][hapmap];0.86[TSI][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10878299	0.85[CEU][hapmap];0.86[JPT][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10878302	0.85[CEU][hapmap];0.86[JPT][hapmap];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10878336	0.86[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10878386	0.90[GIH][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11175793	0.85[CEU][hapmap];0.86[JPT][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11175852	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11175884	0.88[LWK][hapmap]
rs11175902	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11175913	0.85[CEU][hapmap];0.86[JPT][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11175926	0.88[LWK][hapmap]
rs11175941	0.85[CEU][hapmap];0.86[JPT][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11175959	0.82[CEU][hapmap];0.86[JPT][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11175963	0.85[CEU][hapmap];0.86[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11175964	0.85[CEU][hapmap];0.94[CHD][hapmap];0.90[GIH][hapmap];0.86[JPT][hapmap];0.86[TSI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11176022	0.82[CEU][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11176195	0.90[GIH][hapmap];0.83[AMR][1000 genomes]
rs11176261	0.83[AMR][1000 genomes]
rs11564183	0.85[CEU][hapmap];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11836288	0.83[AMR][1000 genomes]
rs12302298	0.89[YRI][hapmap];0.88[AFR][1000 genomes]
rs12314692	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12316801	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12426498	0.83[AMR][1000 genomes]
rs12426891	0.85[CEU][hapmap];0.89[CHD][hapmap];0.90[GIH][hapmap];0.86[JPT][hapmap];0.86[TSI][hapmap];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1388598	0.81[GIH][hapmap]
rs1491943	0.81[GIH][hapmap]
rs17443414	0.85[ASN][1000 genomes]
rs17490817	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17490865	0.81[AMR][1000 genomes]
rs28365224	0.85[CEU][hapmap];0.86[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3747891	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4318033	0.85[CEU][hapmap];0.86[JPT][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56325408	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72546323	0.84[AFR][1000 genomes]
rs7308720	0.85[CEU][hapmap];0.90[GIH][hapmap];0.86[TSI][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73108329	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73108339	0.90[EUR][1000 genomes]
rs73108368	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
LRRK2	Proximal transcriptional regulation
LRRK2	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)