SNP Report
Basic Infomation
| Name | rs17490865 dbSNP |
|---|---|
| Location | chr:12,40659706 |
| Allele | C/G |
LD-proxy of rSNPs(r2>0.8) (count: 25)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10459264 | 0.83[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs10784485 | 0.83[AMR][1000 genomes] |
| rs10784497 | 0.83[AMR][1000 genomes] |
| rs10878299 | 0.83[AMR][1000 genomes] |
| rs10878302 | 0.83[AMR][1000 genomes] |
| rs10878336 | 0.81[AMR][1000 genomes] |
| rs10878386 | 0.85[AMR][1000 genomes] |
| rs11175793 | 0.83[AMR][1000 genomes] |
| rs11175852 | 0.81[AMR][1000 genomes] |
| rs11175902 | 0.87[AMR][1000 genomes] |
| rs11175913 | 0.83[AMR][1000 genomes] |
| rs11175941 | 0.87[AMR][1000 genomes] |
| rs11175959 | 0.81[AMR][1000 genomes] |
| rs11175963 | 1.00[AFR][1000 genomes];0.87[AMR][1000 genomes] |
| rs11175964 | 1.00[AFR][1000 genomes];0.87[AMR][1000 genomes] |
| rs11176022 | 0.83[AFR][1000 genomes];0.87[AMR][1000 genomes] |
| rs12314692 | 0.83[AMR][1000 genomes] |
| rs12316801 | 0.81[AMR][1000 genomes] |
| rs12426891 | 0.83[AMR][1000 genomes] |
| rs28365224 | 0.87[AMR][1000 genomes] |
| rs4318033 | 0.83[AMR][1000 genomes] |
| rs56325408 | 0.85[AMR][1000 genomes] |
| rs7133914 | 0.81[AMR][1000 genomes] |
| rs73108329 | 0.87[AMR][1000 genomes] |
| rs73108368 | 0.87[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| LRRK2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014