SNP Report
Basic Infomation
| Name | rs11176053 dbSNP |
|---|---|
| Location | chr:12,40724030 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 24)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10459264 | 0.93[JPT][hapmap] |
| rs10784485 | 0.81[JPT][hapmap] |
| rs10784497 | 0.81[JPT][hapmap] |
| rs10784498 | 0.82[GIH][hapmap] |
| rs10878299 | 0.81[JPT][hapmap] |
| rs10878302 | 0.81[JPT][hapmap] |
| rs10878336 | 0.81[JPT][hapmap] |
| rs10878386 | 0.93[JPT][hapmap] |
| rs10878452 | 0.87[JPT][hapmap] |
| rs11175793 | 0.81[JPT][hapmap] |
| rs11175913 | 0.81[JPT][hapmap] |
| rs11175941 | 0.80[JPT][hapmap] |
| rs11175959 | 0.81[JPT][hapmap] |
| rs11175963 | 0.81[JPT][hapmap] |
| rs11175964 | 0.81[JPT][hapmap] |
| rs11176052 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11176195 | 0.87[JPT][hapmap] |
| rs11176261 | 0.87[JPT][hapmap] |
| rs11835105 | 0.87[JPT][hapmap] |
| rs12426498 | 0.87[JPT][hapmap] |
| rs12426891 | 0.81[JPT][hapmap] |
| rs2404832 | 0.82[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs28365224 | 0.81[JPT][hapmap] |
| rs4318033 | 0.81[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| LRRK2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014