SNP Report

Basic Infomation

Name	rs10878452 dbSNP
Location	chr:12,40766600
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 23)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10459264	0.87[CEU][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes]
rs10878336	0.87[CEU][hapmap]
rs10878386	0.87[CEU][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes]
rs11175902	0.82[AMR][1000 genomes]
rs11175941	0.85[CEU][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes]
rs11175963	1.00[YRI][hapmap];0.82[AMR][1000 genomes]
rs11175964	1.00[YRI][hapmap];0.82[AMR][1000 genomes]
rs11176022	0.82[AMR][1000 genomes]
rs11176052	0.87[JPT][hapmap]
rs11176053	0.87[JPT][hapmap]
rs11176195	0.87[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11176261	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11835105	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs11836288	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12426498	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17492159	0.87[CEU][hapmap];0.87[EUR][1000 genomes]
rs17520991	0.86[JPT][hapmap];0.87[EUR][1000 genomes]
rs28365224	0.82[AMR][1000 genomes]
rs28365238	0.87[CEU][hapmap];0.93[JPT][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73101517	0.87[EUR][1000 genomes]
rs73101520	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73108329	0.82[AMR][1000 genomes]
rs73108368	0.82[AMR][1000 genomes]

rSNP related genes

Symbol	Regulation type
LRRK2	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)