SNP Report
Basic Infomation
| Name | rs73101520 dbSNP |
|---|---|
| Location | chr:12,40801050 |
| Allele | A/T |
LD-proxy of rSNPs(r2>0.8) (count: 19)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10459264 | 0.86[AMR][1000 genomes] |
| rs10878386 | 0.83[AMR][1000 genomes] |
| rs10878452 | 0.82[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs11175902 | 0.81[AMR][1000 genomes] |
| rs11175941 | 0.81[AMR][1000 genomes] |
| rs11175963 | 0.81[AMR][1000 genomes] |
| rs11175964 | 0.81[AMR][1000 genomes] |
| rs11176022 | 0.81[AMR][1000 genomes] |
| rs11176195 | 0.90[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs11176261 | 0.90[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs11836288 | 0.90[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs12426498 | 0.90[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs17492159 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17520991 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28365224 | 0.81[AMR][1000 genomes] |
| rs28365238 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs73101517 | 1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs73108329 | 0.81[AMR][1000 genomes] |
| rs73108368 | 0.81[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000258167 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014