SNP Report
Basic Infomation
| Name | rs17492159 dbSNP |
|---|---|
| Location | chr:12,40808081 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 28)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10459264 | 1.00[CEU][hapmap] |
| rs10784485 | 0.85[CEU][hapmap] |
| rs10784497 | 0.85[CEU][hapmap] |
| rs10878299 | 0.85[CEU][hapmap] |
| rs10878302 | 0.85[CEU][hapmap] |
| rs10878386 | 1.00[CEU][hapmap] |
| rs10878452 | 0.87[CEU][hapmap];0.87[EUR][1000 genomes] |
| rs11175793 | 0.85[CEU][hapmap] |
| rs11175913 | 0.85[CEU][hapmap] |
| rs11175941 | 1.00[CEU][hapmap] |
| rs11175959 | 0.82[CEU][hapmap] |
| rs11175963 | 0.85[CEU][hapmap] |
| rs11175964 | 0.85[CEU][hapmap] |
| rs11176022 | 0.82[CEU][hapmap] |
| rs11176195 | 1.00[CEU][hapmap];0.92[EUR][1000 genomes] |
| rs11176261 | 1.00[CEU][hapmap];0.92[EUR][1000 genomes] |
| rs11564183 | 0.85[CEU][hapmap] |
| rs11835105 | 0.86[JPT][hapmap] |
| rs11836288 | 0.92[EUR][1000 genomes] |
| rs12426498 | 1.00[CEU][hapmap];0.92[EUR][1000 genomes] |
| rs12426891 | 0.85[CEU][hapmap] |
| rs17520991 | 1.00[CHB][hapmap];0.87[JPT][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28365224 | 0.85[CEU][hapmap] |
| rs28365238 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs4318033 | 0.85[CEU][hapmap] |
| rs7308720 | 0.85[CEU][hapmap] |
| rs73101517 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs73101520 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| MUC19 | Proximal transcriptional regulation |
| ENSG00000258167 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014