SNP Report
Basic Infomation
| Name | rs11835105 dbSNP |
|---|---|
| Location | chr:12,40758045 |
| Allele | T/G |
LD-proxy of rSNPs(r2>0.8) (count: 15)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10459264 | 0.93[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs10878386 | 0.80[CHD][hapmap];0.93[JPT][hapmap] |
| rs10878452 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
| rs11176052 | 0.87[JPT][hapmap] |
| rs11176053 | 0.87[JPT][hapmap] |
| rs11176195 | 1.00[CHB][hapmap];0.95[CHD][hapmap];0.86[JPT][hapmap];0.88[ASN][1000 genomes] |
| rs11176261 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
| rs11564173 | 0.82[YRI][hapmap] |
| rs11564175 | 0.82[YRI][hapmap] |
| rs11564177 | 0.82[YRI][hapmap] |
| rs12426498 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
| rs17492159 | 0.86[JPT][hapmap] |
| rs17520991 | 0.86[JPT][hapmap] |
| rs28365238 | 0.92[JPT][hapmap] |
| rs66737902 | 0.87[AFR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| LRRK2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014