SNP Report
Basic Infomation
| Name | rs11564173 dbSNP |
|---|---|
| Location | chr:12,40750471 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 17)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11564147 | 1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs11564175 | 1.00[YRI][hapmap] |
| rs11564177 | 0.90[LWK][hapmap];1.00[YRI][hapmap] |
| rs11564203 | 0.83[LWK][hapmap];0.94[YRI][hapmap] |
| rs11564204 | 1.00[YRI][hapmap] |
| rs11564205 | 0.81[LWK][hapmap] |
| rs11564267 | 0.89[YRI][hapmap] |
| rs11829088 | 0.81[LWK][hapmap];0.89[YRI][hapmap] |
| rs11835105 | 0.82[YRI][hapmap] |
| rs17444202 | 0.87[EUR][1000 genomes] |
| rs17466339 | 0.89[YRI][hapmap] |
| rs17520278 | 0.88[YRI][hapmap] |
| rs58911468 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs66737902 | 0.81[EUR][1000 genomes] |
| rs73277531 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73277533 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs919174 | 1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| LRRK2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014